Scaffold Ga0244777

Basic Information
Taxon OID	3300024343 Open in IMG/M
Scaffold ID	Ga0244777_10000073 Open in IMG/M
Source Dataset Name	Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024343 Open in IMG/M

Scaffold ID

Ga0244777_10000073 Open in IMG/M

Source Dataset Name

Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	76892
Total Scaffold Genes	68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (19.12%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

76892

Total Scaffold Genes

68 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (19.12%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026824	Metagenome / Metatranscriptome	196	Y
F026863	Metagenome / Metatranscriptome	196	Y
F039601	Metagenome / Metatranscriptome	163	N
F039634	Metagenome / Metatranscriptome	163	Y
F053807	Metagenome / Metatranscriptome	140	Y
F070891	Metagenome / Metatranscriptome	122	N
F091365	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1000007320	F053807	N/A	MSYSLVYSAKPHCTHTIQVYEPNQQDSPYVRGLKACSKLIDVIFATKAHFTPSKRLHIKGRKYMYISSDTYQLLIRVKNFDK
Ga0244777_1000007321	F091365	N/A	MKMYSQAELSTMQEMAKKPISTTRLAKRLAKQFNRTYGGVYAKLLIMRRHTKVEPVITNTVRTKTVVEGKKHTISSRPTKIEISDQGMTFYF
Ga0244777_1000007323	F070891	N/A	MKKLYEILFEDKKPEEQPLKLEIKLKSTATPEEQLEINEWYRHVYNSLQRN
Ga0244777_1000007331	F026824	N/A	MVVVNVLLVIVTLLSMAVIVWGLVCFEEYEIGIEFLPKDYNSFELGVSNRNYKLEDEGLEQELRIGLLLFSVIFLFRRFDA
Ga0244777_1000007335	F026863	AGCAGG	VKIERIPLDRLIDTLVDLYNKGIDYVDIVGVPGVEFDRMGIAFTRDYMTEHGKENFGEIGVDLEIISSKLTDDDLNELI
Ga0244777_100000734	F039634	N/A	MIMKLNFKTYNTLPNEKSHWWQVVLFPTVSVMNNIQKHDPYVALNVEYLFWSLTTIISYGKKQAHPYATR
Ga0244777_1000007347	F039601	N/A	MLSPRLTDCVIDASIPVTLTQIDERLTYWAKLQYNNIVFSLNNYIPGEIIQDLLNYKQILTYRLCNPTYAMVCGLPTTSQVVSRVKVLIYK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244777_10000073

Overview

Ecosystem & Geography

Associated Families

Sequences