NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244777_10000046

Scaffold Ga0244777_10000046


Overview

Basic Information
Taxon OID3300024343 Open in IMG/M
Scaffold IDGa0244777_10000046 Open in IMG/M
Source Dataset NameCombined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)101906
Total Scaffold Genes124 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (45.97%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001968Metagenome / Metatranscriptome610Y
F011477Metagenome / Metatranscriptome290Y
F018881Metagenome / Metatranscriptome232Y
F048106Metagenome / Metatranscriptome148N
F070113Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0244777_100000461F001968N/AELWSEIADAPGEIFDLPELRELDEEKFNLNDYLNSNIDY
Ga0244777_10000046100F018881GGAVTPKILNSDGNYDEWCEEEIIKSYKDAAEYDDVLFGDHDYSYIWLNNKTNESP
Ga0244777_100000465F070113GGAGMTLNKAQFEQFVENYVSDIVAGLDVDQLSTIAFDLLVREYETYTEEQIVNEIKEIYDEEYAQDLLESATAVPVA
Ga0244777_1000004689F048106N/AMKDLQAFLDNIIDIFTTKKSLPKDVMNDFIKYFYFTLDKEIKSNKSEVLKNKYIKIRKNGLNYIVANKEAIMANIRKKKLSK
Ga0244777_1000004692F011477GAGGMSVAALWAWVIANEAAVATILLVVSEFLGAVPKLKANGLVSYVILQVQQNLKKKGAVDPT

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