Basic Information | |
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Taxon OID | 3300024343 Open in IMG/M |
Scaffold ID | Ga0244777_10000046 Open in IMG/M |
Source Dataset Name | Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 101906 |
Total Scaffold Genes | 124 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 57 (45.97%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | (Source: IMG-VR) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | Columbia River Estuary, USA | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001968 | Metagenome / Metatranscriptome | 610 | Y |
F011477 | Metagenome / Metatranscriptome | 290 | Y |
F018881 | Metagenome / Metatranscriptome | 232 | Y |
F048106 | Metagenome / Metatranscriptome | 148 | N |
F070113 | Metagenome / Metatranscriptome | 123 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0244777_100000461 | F001968 | N/A | ELWSEIADAPGEIFDLPELRELDEEKFNLNDYLNSNIDY |
Ga0244777_10000046100 | F018881 | GGA | VTPKILNSDGNYDEWCEEEIIKSYKDAAEYDDVLFGDHDYSYIWLNNKTNESP |
Ga0244777_100000465 | F070113 | GGAG | MTLNKAQFEQFVENYVSDIVAGLDVDQLSTIAFDLLVREYETYTEEQIVNEIKEIYDEEYAQDLLESATAVPVA |
Ga0244777_1000004689 | F048106 | N/A | MKDLQAFLDNIIDIFTTKKSLPKDVMNDFIKYFYFTLDKEIKSNKSEVLKNKYIKIRKNGLNYIVANKEAIMANIRKKKLSK |
Ga0244777_1000004692 | F011477 | GAGG | MSVAALWAWVIANEAAVATILLVVSEFLGAVPKLKANGLVSYVILQVQQNLKKKGAVDPT |
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