Scaffold Ga0228631_1000826

Overview

Basic Information

• Taxon OID: 3300024329
• Scaffold ID: Ga0228631_1000826
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 39D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16517
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (11.90%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001728	Metagenome / Metatranscriptome	645	Y
F010473	Metagenome / Metatranscriptome	303	Y
F043091	Metagenome / Metatranscriptome	157	N
F100936	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228631_100082613	F001728	N/A	MNDFQLRKTKKDHYRLFINGVDVTGEQERSTFRHIIEVIDNKITTGL
Ga0228631_100082621	F010473	N/A	MNLIRYEIKAGFFKGFLFGVRHYPFDDEDIHEEDIVLYIGIFQIILTLIYEK
Ga0228631_100082627	F043091	N/A	MELTEKKLEKISGAIISSFINLHLLEDADKIGLFRQRVRNNIRRTISDLKDIEINYYNKIEEVDEKELGDKLIANKLIFIDWVLNKFDFNDFCKIQEVCLAYEADKERITQVTDEVLINNGAEQIDEQI
Ga0228631_100082634	F100936	N/A	MEKYKLYITSESGERETWTNGETVKECIDKLKDFHTFGEFEKEFFTKKGEDRLNKELNSGWYINLKNK