NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233398_1025171

Scaffold Ga0233398_1025171


Overview

Basic Information
Taxon OID3300024320 Open in IMG/M
Scaffold IDGa0233398_1025171 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 38D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1673
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080057Metagenome / Metatranscriptome115N
F088304Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0233398_10251711F088304GAGGMGIVTNNKRAAQADKDFNLSFNEGHEIKVQFNCEVLSGCEFKCKGCFVNKLGSNMGSYDRLNNAIDLFNNNGYRVSTINIGPTDIFGNNNIRELLQDETFRECLSKVTTIQFVTTLEKIDYTVIEMLNSIPKVDGFMYDVNIALQPPVNWNVLEYKLNILNDLKDDLNYYMVYNMGNDDEYNSKV
Ga0233398_10251712F080057N/ANIVDGGRGEEFMSIDNMKQYKIQVNLEILEGCSYMCPGCFVKRKGNWNSNSIATFHSLAYELKDRDDIVLDDIVIGPTDFYGAQNLEEIINNQRLADAISMMPEDNRNIQHNCSILGSLSEKDIEGKIKSIENSPLGKVVEAWDVQIALDLNRLMNDQVYLDALDERVETFKNSSLNFEISMATNIVQGVEDILFPAIEFVRDRYETVIEVLPSVVRSFNHSAKHGDKLFEWNDMLSRLAVDPNRFKNKFHFLQGDVSHKAFHYSVISIYHGDMYLSPFIYENAQIHTDDFKVDNGWLWLPDADITDYILRKKDEVVVSQIENSGNKECGSCKYLNICANRMVPMIMDTVFSGRKECILNKDVISLYDDEVYHGNSY
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