Scaffold Ga0228624_1000094

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0228624_1000094

Scaffold Ga0228624_1000094

Overview

Basic Information
Taxon OID	3300024313 Open in IMG/M
Scaffold ID	Ga0228624_1000094 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Monterey Bay, California, United States - 29D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	54894
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (22.22%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.8313	Long. (^o)	-121.9047	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F071751	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228624_100009439	F071751	N/A	MSNIKKFAEFVNESLNEAELPSWVEGGPYDSLKDMTGNIDLDGMTVADINKNYQPALKYLGVKSIADMGYLSSTANDDELYDIVSPQMKGSNLLGNDRGKGMDPSPYTAAYKGMLGDVKIIIVQDINQENSYAYAAVDSRGNLK

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