Scaffold Ga0233391_1008002

Overview

Basic Information

• Taxon OID: 3300024304
• Scaffold ID: Ga0233391_1008002
• Source Dataset Name: Subsurface microbial communities from Mancos shale, Colorado, United States - Mancos A_10_July_PB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 539
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.96
  • Long. (^o): -106.99
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012678	Metagenome / Metatranscriptome	278	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233391_10080021	F012678	AGAAG	MLNQHSLEEIADIHRLLEDIKKEYEEGIKPVLVKNSPNLFRNPHTVPKLKKIQINRG