NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233451_10332623

Scaffold Ga0233451_10332623


Overview

Basic Information
Taxon OID3300024301 Open in IMG/M
Scaffold IDGa0233451_10332623 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011504CT (spades assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)572
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047465Metagenome / Metatranscriptome149N
F085074Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0233451_103326231F047465N/AYMNNEKLLNELLVVRSCVQSQVPDASVRTQMLTILDKRINEITDELNAIEEAQIFGADMAMDVA
Ga0233451_103326232F085074N/AAYRDKREVIYSPETYWEKISFGNQLSVKNFKDYSFIGKAGDNLYWSNNQESAKLNLKTDRFTANKGRIQLQAICKLKHKNWNEFGY

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