NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255178_1005721

Scaffold Ga0255178_1005721


Overview

Basic Information
Taxon OID3300024298 Open in IMG/M
Scaffold IDGa0255178_1005721 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepC_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2785
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028149Metagenome / Metatranscriptome192N
F090287Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0255178_10057211F028149N/ALKDIRPFDGLIGYYQTGSFDAYSGTQHTFDRFNSVFPNVTTSWDPVSGASCSGTPCDPTENKIGWGWTRNTYALEKQSWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAMELGGSLAGGNAFACAAGLPAINFAWVGAGYTTLRVTNNAGVAVAAASLGRLTPEILQSRVTRQYFLGAIQAGKEGFDSLQLHTDKDTFRYLQKTNATLYDAWRFGVFAPAAKEFYKYGFMGFVGDFMVKVLQFPLKFNATATPGNYTLVLPYKNIAATEGIKSVFNEDYDKAQFQISYINNPRSLRVLPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCAGKPIDNARGNKGKFIADFQLAVKPEHPEWLEPIFHKVDRGCIEIIPVCEADPGDPAQSYNSADPVCATVVQFVAVANDAGNYVIGTTGIMCDDNIVTNAGISEATPAALVAALQVVWDAEFGATSGTWTVVSGTTIQLAGSSTETVPCTNVTLEFSI
Ga0255178_10057213F090287AGGAGGMAALTSNQIAALSGCFDCLSPGIKETYMVTLLQQIQAALPGASLTTSSPGGLLTVTATSAANPSRKRFVLQNQKNEVLYLKFGTGASATDYHVQLQEHNAGAKHSVPFIFDGYVGAISVAPAAGNPSYTFSEFV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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