NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228629_1090011

Scaffold Ga0228629_1090011


Overview

Basic Information
Taxon OID3300024296 Open in IMG/M
Scaffold IDGa0228629_1090011 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 36D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)821
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024324Metagenome / Metatranscriptome206N
F088281Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0228629_10900111F088281AGGAGGMTKEKQSKRHHATEIIQLFREGRSDEALVLFEKYEFRKEFISFAIKKGIEYEDARDLVQKFTIDKLYLQSNSIKNIEFARTWMYSVLNNMVNDQGRILKKTREVPLDEERDQSQSPKIMSEKSQTRSGCIQEQLAKFREAEPKRAEILEFILEGFSKEEIRLI
Ga0228629_10900112F024324N/AINFPQAKEEDLGIINTDLISVFDFATLKIAFFGNFIQGQMFDSLMAFFNTIKIEVTNPHKIYFDIPSDEFSLNGYVAAKLKAKELCEDIVKTTSL
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