NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224556_1006358

Scaffold Ga0224556_1006358


Overview

Basic Information
Taxon OID3300024295 Open in IMG/M
Scaffold IDGa0224556_1006358 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3225
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003337Metagenome / Metatranscriptome493Y
F004095Metagenome / Metatranscriptome453Y
F061488Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0224556_10063583F003337N/AMVILCPLSLAAADTGSAILHSNGGVSVNGTEVADSTAVFPGDVLETKPGFVANLDAEGSSVLIQGESIVEFQDNALRLEHGSVSVSTSTAMSVHVNCLKVEPVSNDRTQYDVTDVSGKVEVAAHKNDVKITQGGALGKASKEGNSSQSGTVHEGQRATRDESTACGAAPRPGEASNPLNTKWIEIGGGAGAGVLVLCLLLCRSSGSSSVSPSQP
Ga0224556_10063584F004095AGGAGMSGVNGDKARFNRRRRHKISRRQSREKMLKVLAEKYLVAPAAQVNLKENVA
Ga0224556_10063585F061488AGGAMTTPVLTLPPPNPDVSSAKKKRVLLLDTSQTKRDLRADVMRKLGIDVDCAADVLEARCWWRADLYNLVLINVAGEADSRDKFCTDLRSATPPQRIAFFVGGPEYLAAAPHSDAAPAEADADALHKEMVAALLAQASGSSSQRWGILEACKKISSVRSVSEA

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