Scaffold Ga0224556_1006358

Overview

Basic Information

• Taxon OID: 3300024295
• Scaffold ID: Ga0224556_1006358
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3225
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003337	Metagenome / Metatranscriptome	493	Y
F004095	Metagenome / Metatranscriptome	453	Y
F061488	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224556_10063583	F003337	N/A	MVILCPLSLAAADTGSAILHSNGGVSVNGTEVADSTAVFPGDVLETKPGFVANLDAEGSSVLIQGESIVEFQDNALRLEHGSVSVSTSTAMSVHVNCLKVEPVSNDRTQYDVTDVSGKVEVAAHKNDVKITQGGALGKASKEGNSSQSGTVHEGQRATRDESTACGAAPRPGEASNPLNTKWIEIGGGAGAGVLVLCLLLCRSSGSSSVSPSQP
Ga0224556_10063584	F004095	AGGAG	MSGVNGDKARFNRRRRHKISRRQSREKMLKVLAEKYLVAPAAQVNLKENVA
Ga0224556_10063585	F061488	AGGA	MTTPVLTLPPPNPDVSSAKKKRVLLLDTSQTKRDLRADVMRKLGIDVDCAADVLEARCWWRADLYNLVLINVAGEADSRDKFCTDLRSATPPQRIAFFVGGPEYLAAAPHSDAAPAEADADALHKEMVAALLAQASGSSSQRWGILEACKKISSVRSVSEA