Scaffold Ga0224556_1003916

Overview

Basic Information

• Taxon OID: 3300024295
• Scaffold ID: Ga0224556_1003916
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4177
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F006278	Metagenome / Metatranscriptome	377	Y
F010114	Metagenome / Metatranscriptome	308	Y
F017965	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224556_10039163	F010114	GAGG	MIIELNDDDTRLLRTVLLEQAQEHLSYADTSEVAEKLCELANRFERPVRELPNITIA
Ga0224556_10039164	F001596	GAG	MSWFHSSAPPVDARNHASPAEVVACFQDQRNVLGRLAFLITGDRATADQAVVQACEITLRGNSPFRDWLLEWAKAATIASAISNGTEAIRICEAAHKDRRCPHVEHLSQSDAEERAVVLDFVLGADAKTLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLGANCHAMTWLHDSQVNPVEENQDPSHAV
Ga0224556_10039165	F006278	GAGG	MFRAEIQWLASGPTLKLEGKLVADWAEQARCLVTKDVLPKDLTVDLTEVSYVDSVGEQLLKWLASVGAVFVAGSVYGLAVCDRLRLSPMQRIAERRKRQHGNHAEPSSIPPIQLTPFEGH
Ga0224556_10039166	F017965	N/A	LTDMSDQIAHRDALYLFACHLEWRTKRNLTAYQQLLAALDDHDDDIRRLAESLLHRRAPRPARTATGMESW