Scaffold Ga0247667_1013070

Overview

Basic Information

• Taxon OID: 3300024290
• Scaffold ID: Ga0247667_1013070
• Source Dataset Name: Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1662
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 40.4449
  • Long. (^o): -87.0297

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004395	Metagenome	440	Y
F026116	Metagenome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247667_10130701	F026116	N/A	FRNTLNAALSETWLPFVQTVSGATEQNYIFTREANDKYVVLIVSIEQRDATVIQVTLSPTNFARLLKDPEGTGKAIAEEATINDQE
Ga0247667_10130702	F004395	AGGAG	MYKLRWNTLLLVVIAVLAALPVHAQEVEDTIRIKTRAVFLDALVKDRKTNLPISNLTQENFQVLDDGKPRPISYFTHEGQARKPLALILILDLREDGAGRFLKETEILKAMENELLKLPPGDEVAILAMNIGEDEQRTWTTEFTNDRAKIAAALAQVQEICAKKNPPPPAQTAPTDSTPVNKQVVSTETIPGKKGVVTRTTMSDGSVEVKRVSNNGKMTVDLGDVYDMAGAVREATLKAQQLRPNSQMSLVWMSDGIAPIFFEDRDATQQILIRDNVIFNSLTVELRTLFKFLLPVGKPIAGWLGMSLYGSAKLLAQQSGGEAVKVARVKDYGAGLQRIIGNLTARYSLGFTLAENENDDGRMHHLEVRVTAPDEKGKKRKLLVSSRQGYYMTYPPITQKQ