Scaffold Ga0255147_1002733

Overview

Basic Information

• Taxon OID: 3300024289
• Scaffold ID: Ga0255147_1002733
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4220
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000868	Metagenome / Metatranscriptome	853	Y
F009531	Metagenome / Metatranscriptome	316	Y
F034902	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_10027334	F000868	AGGA	MAESFLENENQMVIDAIYQEIGEQLVEDWVNSNLDEGQMYADFRFAEMSNDNYIKGRFNQFYNLTPEDQYYLEWDEEK
Ga0255147_10027335	F009531	N/A	MTLNVEIYEMEYSCSPGGVDCWEVNIQGYGNSKCVSDFDTAGSALNWVLDQYPDQMLELTVTSLPAYERINNG
Ga0255147_10027338	F034902	AGGA	MISTALAIQEATRDAVHDDEVMSMAAAIYHARHEVSEDDFIRMMYMYSAHLSAMTATLVTHVCLTESQLNDMLETIKEMETMGKDIE