Scaffold Ga0255147

Basic Information
Taxon OID	3300024289 Open in IMG/M
Scaffold ID	Ga0255147_1000951 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024289 Open in IMG/M

Scaffold ID

Ga0255147_1000951 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7499
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (88.00%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

7499

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (88.00%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.4271	Long. (^o)	-81.6053	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.4271

Long. (^o)

-81.6053

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005092	Metagenome / Metatranscriptome	412	Y
F013526	Metagenome / Metatranscriptome	270	Y
F016958	Metagenome / Metatranscriptome	243	Y
F017484	Metagenome / Metatranscriptome	240	Y
F026861	Metagenome / Metatranscriptome	196	Y
F029721	Metagenome / Metatranscriptome	187	Y
F049499	Metagenome	146	Y
F058095	Metagenome / Metatranscriptome	135	Y
F085710	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_100095110	F085710	AGGA	MDYLDYQDEIYLDIYLEFGAEAVTDPAYAEELLSKSQF
Ga0255147_100095112	F026861	AGGA	MKLDEFKKLIEAQRQEIKLTNLEKIAKIVETTTKKGNN
Ga0255147_100095116	F029721	AGGAG	MRSYSIEDLLVGQFYKPASLARRFFGGEIDFAEKRDDVWVGENYQAYSIRYRVSNSMKTEWATIAVKVSDL
Ga0255147_100095118	F005092	AGGA	MNKMDKLEMALRLIANCQLCNGRGYDYWANGEDFDAEPCQCNIYDIILDEDGDVIYDNGLSTQYDLSIYATAEAN
Ga0255147_10009512	F016958	AGGA	MKLKITSMNGKEMDMDLPTKENVYYFIEMYRKSLKRNQRVKITCDILGIDGYLQGTSPTR
Ga0255147_100095120	F058095	GAGG	MEYNYVLTTSYDGELFATNRISDFMEAHEAWAKCVDHGNAKEYATYNLTDLTGKMYTKTFYANGKVTIR
Ga0255147_100095121	F049499	AGG	MSATIIDMDYRLVDTLNSDQLEIDDLIGLGDEVVKIISISSLRHGYLLTYENEFGERDILEIGDEEVFELYILE
Ga0255147_10009518	F017484	AGGAG	MGSLEIFEINENGAGWVSLENASASAKLDLELALLTKAEMKMLCFKCHVEIPRGNVCVNHKNVKGAVYFE
Ga0255147_10009519	F013526	AGGAG	LSKKNVLISFVTDAETDLDAIFALNKVMYKLPESDVVKFDAFEVLDVVE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0255147_1000951

Overview

Ecosystem & Geography

Associated Families

Sequences