Basic Information | |
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Taxon OID | 3300024289 Open in IMG/M |
Scaffold ID | Ga0255147_1000473 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11469 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (60.87%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 31.4271 | Long. (o) | -81.6053 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002564 | Metagenome / Metatranscriptome | 547 | Y |
F006785 | Metagenome / Metatranscriptome | 364 | Y |
F035291 | Metagenome / Metatranscriptome | 172 | Y |
F099336 | Metagenome / Metatranscriptome | 103 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0255147_100047310 | F035291 | AGG | MAQTTPKAHPLLERVDRLASCEGHWLLIRDGEPETDCGHQWHQTPEAHLETCLAERWRGVSLGFAPSYCGYSDYSRTGLVGLSNYRVMTDTASTPDPNGAVLEIGYGWNGRGVVLDLRYVTEDQLETIEGLESYPLISEDDHSQLECEGIEADWGRESIADRVRTLQQLGLCIFAARDDSAPWRDGFDRLRESILETLNEYPTALT |
Ga0255147_100047318 | F002564 | GGAGG | MALTISRGTNLVEHHQSTPLTAVNQTFEVHADSSEFTFAAVVTGGANFTLSFEANYNGGNTWFELDSSKTINSNGQYAYFYTGKPANKVRMRIASISSGTPSVVPIVAVAYHG |
Ga0255147_100047319 | F099336 | N/A | MIETVSGGCVHIEIDAEEGTTTATFVFATPNEPAILGAFVSKLAQGVEVLIPIEEEEEDD |
Ga0255147_10004738 | F006785 | AGG | VTGGQWSTKGLQREAREAEREQIRLEKRQLRDLRWAIERSTVKASDWQDLLTLHQMHGKEGPLQLWRELVPYWRDCQRVNRGADIPAGLFPQATRLLTRQTEKAPATRVKAAKGSTRKTRSDAGKRQPSRKSS |
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