NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1000473

Scaffold Ga0255147_1000473


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1000473 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11469
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (60.87%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002564Metagenome / Metatranscriptome547Y
F006785Metagenome / Metatranscriptome364Y
F035291Metagenome / Metatranscriptome172Y
F099336Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_100047310F035291AGGMAQTTPKAHPLLERVDRLASCEGHWLLIRDGEPETDCGHQWHQTPEAHLETCLAERWRGVSLGFAPSYCGYSDYSRTGLVGLSNYRVMTDTASTPDPNGAVLEIGYGWNGRGVVLDLRYVTEDQLETIEGLESYPLISEDDHSQLECEGIEADWGRESIADRVRTLQQLGLCIFAARDDSAPWRDGFDRLRESILETLNEYPTALT
Ga0255147_100047318F002564GGAGGMALTISRGTNLVEHHQSTPLTAVNQTFEVHADSSEFTFAAVVTGGANFTLSFEANYNGGNTWFELDSSKTINSNGQYAYFYTGKPANKVRMRIASISSGTPSVVPIVAVAYHG
Ga0255147_100047319F099336N/AMIETVSGGCVHIEIDAEEGTTTATFVFATPNEPAILGAFVSKLAQGVEVLIPIEEEEEDD
Ga0255147_10004738F006785AGGVTGGQWSTKGLQREAREAEREQIRLEKRQLRDLRWAIERSTVKASDWQDLLTLHQMHGKEGPLQLWRELVPYWRDCQRVNRGADIPAGLFPQATRLLTRQTEKAPATRVKAAKGSTRKTRSDAGKRQPSRKSS

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