Basic Information | |
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Taxon OID | 3300024289 Open in IMG/M |
Scaffold ID | Ga0255147_1000435 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12174 |
Total Scaffold Genes | 35 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (88.57%) |
Novel Protein Genes | 19 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 18 (94.74%) |
Associated Families | 19 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 31.4271 | Long. (o) | -81.6053 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000311 | Metagenome / Metatranscriptome | 1326 | Y |
F000447 | Metagenome / Metatranscriptome | 1128 | Y |
F000450 | Metagenome / Metatranscriptome | 1126 | Y |
F001019 | Metagenome / Metatranscriptome | 804 | Y |
F001781 | Metagenome / Metatranscriptome | 635 | Y |
F002071 | Metagenome / Metatranscriptome | 596 | Y |
F003663 | Metagenome / Metatranscriptome | 474 | Y |
F004666 | Metagenome / Metatranscriptome | 428 | Y |
F005741 | Metagenome / Metatranscriptome | 391 | Y |
F005745 | Metagenome / Metatranscriptome | 391 | Y |
F008132 | Metagenome / Metatranscriptome | 338 | Y |
F018349 | Metagenome / Metatranscriptome | 235 | Y |
F024549 | Metagenome / Metatranscriptome | 205 | Y |
F029721 | Metagenome / Metatranscriptome | 187 | Y |
F038643 | Metagenome / Metatranscriptome | 165 | Y |
F041724 | Metagenome / Metatranscriptome | 159 | Y |
F073599 | Metagenome / Metatranscriptome | 120 | Y |
F095357 | Metagenome / Metatranscriptome | 105 | Y |
F105172 | Metagenome / Metatranscriptome | 100 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0255147_10004351 | F095357 | AGGCGG | VATKEHKVGELLANSVEDHFFNPATLAYYLSQQPTWTIDRVMEVVAWIIEKNARRAEVEAGNGIQSEGLILAYNLDKLVDRIKSTNQFENIKLP |
Ga0255147_100043511 | F000450 | AGGA | VGDRANFAFVQPNGNTIVLYGHWAGHNMLANLAEAVAKAESRWSDPSYATRIVISQMIGDGWGFETGWGIHVNEIGDNEHKIPVIDWAQRTFSLHSEDSFFNEDNKVRGMSNEAIFTMDLAAFVEKYSDLTLSV |
Ga0255147_100043513 | F018349 | AGGAG | MDYEDGFQDGVKFTREVIINNIRKWAEDHEEGPTLDWVADRIEFGTLDNDL |
Ga0255147_100043514 | F000311 | GGA | MYFELTAPDRLSLEMAYWDAQITGLDPEFLPPLTFSVGTGSIEKVSRIRDKFNLKETYLSESEPTGYTRR |
Ga0255147_100043518 | F005741 | N/A | MKNRFRVEIYDANKMNDVTIYSEQGVDKEYLTELVISNLRNFQGQVRAYVFDNLKKKKTTALMLDENVVNKINKKRILTAIEIGLV |
Ga0255147_10004352 | F004666 | AGGA | MATKREYLTQKGITVGRRGRFSAAAKQALSEAEKQGIKFTAETKTAKN |
Ga0255147_100043520 | F002071 | AGG | MPTLEIGQTITTAKSGVVGVIKAVDNHPSGVSRVLLDVNGTERWTSVSN |
Ga0255147_100043522 | F003663 | AGGA | MLSTALEILEATKESIFDEDIMGLAGELHTRRNELDDETYAKFLFMYSSAVASKVADLVTKVLLTETQFREMVEALNEMDNLSEEILEELGE |
Ga0255147_100043523 | F038643 | AGG | MKDTTNWAKFPFTVDGVEFVSMLDPNGSMYQQVKLVPAQVFTMMNESAIRDLIGKVSLMSKSEIQDELDRVNEGFGQAYLALA |
Ga0255147_100043527 | F024549 | GGA | MYKLFTYYDGKLEFTHQFNDALEAFEAFARCVDVGFAMETATYNLEMPTGKMYTKNFDRIGLVSVK |
Ga0255147_10004353 | F001019 | GGAGG | MSIYEPSLEILEVAYEVSPGGTRTFEVYDKDESDPLSIPIYETESLTDAVEYCYNLGKDFIVRTYAEWEMRELLADL |
Ga0255147_100043530 | F000447 | GAG | MGYIEIFRLDENGAGWVDLSEATPDELFNIELGLLNEGALFNTPEAD |
Ga0255147_100043531 | F029721 | GGAG | MKGKLMRTYSIEDLLVGQFYRPASLARRFFGGEINFAEKRDDVWVGTDYQAYSIRYRVGHSVKNEWATIAVKVGE |
Ga0255147_100043533 | F105172 | GGAG | MTLELNDYGLEFDTYVCYIALSWQVLIPALIIGIGYKIYKMKGKKK |
Ga0255147_100043534 | F008132 | AGGA | MMTKWDTIQADVADAYRHLDDVEEIENEEEDFFGFAKAIEIDHLTDEEVEEIFNMFGDK |
Ga0255147_100043535 | F073599 | AGAAGG | MSANLYNIESLLIGKTYRSRSVTGEIISAEKHPKCVHYADAEAYLVEIRKQGGGYTYRTVAVSVS |
Ga0255147_10004355 | F001781 | GGAG | MKPDDKDKLNKCLDILDTTDLGLSLVWLWTWSTIKNFMEDEQFIMKKTEDEMWECLCEAVAAGHGFTLEYGAEQHYDEVMDWMLGREYMVDSDFEDDDE |
Ga0255147_10004356 | F005745 | AGGAG | MQELYSEKLDPHLQRLVDAGVSGLDIMHGHLKILMLEAEAHYEEAQRVEEENDFDDAMQSMERKYWEGQCDALAHLYKLTYDLSFAIAGMENPNEA |
Ga0255147_10004359 | F041724 | AGGA | MADRLELNDRGSFLDDENEMVIGAIIQEISEQLFEDWNNSNLDEGTFYADWKIAEMSNDNYLKGRFNQFYDLTPEDDEYLEWDEEK |
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