Scaffold Ga0255147

Basic Information
Taxon OID	3300024289 Open in IMG/M
Scaffold ID	Ga0255147_1000384 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024289 Open in IMG/M

Scaffold ID

Ga0255147_1000384 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13519
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (17.65%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13519

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (17.65%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.4271	Long. (^o)	-81.6053	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.4271

Long. (^o)

-81.6053

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004112	Metagenome / Metatranscriptome	452	Y
F010155	Metagenome / Metatranscriptome	307	Y
F011844	Metagenome / Metatranscriptome	286	Y
F067666	Metagenome / Metatranscriptome	125	N
F079966	Metagenome / Metatranscriptome	115	Y
F101033	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_100038410	F004112	GAGG	LPNDFFSMSPRHFSLMLNGFKQKKVDQYKQTRLLMFTMVKLMGDPKTSPKTPETLWPLPGDEDPKVDEQEYREIFKRLSK
Ga0255147_100038413	F079966	N/A	MGDVVKSEGLVIAVTDTSGNVYPFACTKDATINISRDFLELAPRTNGVFREYLANRSSFTVSGSGLVKMIQSNMHAITYFEPFMIGTDTEFLAYLDMIDSIGVYKVYQFSCIFQDLSITSTSGGTTNYSFTLQGTGPLTEITSVDSYVVSSGKITARSTASWKLVAVGIEGAWYYNYSVTNEGGGVFSISVGTAYNGKSVKAAYIPI
Ga0255147_100038414	F101033	N/A	MESNFWVVIGFQTIGLAGIGIKIYTDMKVKFREHDLRLKTLEKKEDETAHQFKDIMQALNEIKLELKDKADRL
Ga0255147_100038415	F067666	AGCAG	MIGELNMKPIKKGDTYVITYSFYNDECETDPLDVSTYSFKLQAKDTSGNVVIEWLNAVFVSINNHTRKVTLTPVQTAAYTAGEYQYELEVTISTNKYTWMQGFVEVQNQVTS
Ga0255147_10003847	F010155	N/A	MKDCSNSVRTIYVNALNGNISYNGKNIPVYGQNPFKTLPQNYIIISSITEQADNNNHKFQNIVSVDIDIFSEQYRINDLAVVDNIAGQILNILIPDTAIDGFSDTDFVVYPMSRTNSLYLPLQNGDNYVARKIITINNLVNQK
Ga0255147_10003848	F011844	N/A	MAQVQGSLQNIEIDVAGGTSYKNLVCLRTSSVNSTVDSTTDQTNCGVLTAVGEPQMSLDFDAICETAPTIAQVSYNSLLSAFANKTLVTVRVQNPVVTGSSAGAAYYHQFAGYITSLTLNQATTEFINFSGTIASTGTIDVTA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0255147_1000384

Overview

Ecosystem & Geography

Associated Families

Sequences