NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1000266

Scaffold Ga0255147_1000266


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1000266 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18150
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (82.61%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003582Metagenome / Metatranscriptome478Y
F004666Metagenome / Metatranscriptome428Y
F012013Metagenome / Metatranscriptome284Y
F076961Metagenome / Metatranscriptome117Y
F085211Metagenome / Metatranscriptome111Y
F099174Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_100026610F099174GGAMRKLGASLASLMLALTVTSCNFDGSFRYECQDTANWEKAECNPPICETTGTCSRDLVGQEVWDEYQKTKVKNG
Ga0255147_100026613F003582N/AMKTYKVKLEIEAEVQAFDENDAVDYLNDIFGVDDEVRNVKVVSVKEK
Ga0255147_100026629F076961N/AMVEEYLQEKVRRDIIKEISNLELPNEWKPQQVIDYIIRKINKK
Ga0255147_100026638F085211GAGMWRRILRNFLDDSIVEHKSRPPLRWIANWAGSIASKNMLELSYMEDEGLDKGFRYKYYGWLWDTFWPIYSKYGTFYRLNMDMSGPGWDDYDENGVPYWEKTGTIDPDYDYDEFHWDYIDEETGDAFKVINFGGKE
Ga0255147_100026641F004666AGGAMTTKREYLAQKGITVGRRGRFSAAAKQALSEAEKNGVKFSAETKQAKN
Ga0255147_100026643F012013AGGAVAELDLLEQTRRDDVFKDLVEVIDKLDSIPVFPSLVWTWSLSIIKDIYDNNKYEDLAVNDYVDEAVPTGVTLKQIWDKFWDDVDGLGINMDLGGEIIEEVIRDWMRENDFLVSLDEDGWLNERNEPDWNVLDD

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