Scaffold Ga0255147

Basic Information
Taxon OID	3300024289 Open in IMG/M
Scaffold ID	Ga0255147_1000266 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024289 Open in IMG/M

Scaffold ID

Ga0255147_1000266 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18150
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (82.61%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

18150

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (82.61%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.4271	Long. (^o)	-81.6053	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.4271

Long. (^o)

-81.6053

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003582	Metagenome / Metatranscriptome	478	Y
F004666	Metagenome / Metatranscriptome	428	Y
F012013	Metagenome / Metatranscriptome	284	Y
F076961	Metagenome / Metatranscriptome	117	Y
F085211	Metagenome / Metatranscriptome	111	Y
F099174	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_100026610	F099174	GGA	MRKLGASLASLMLALTVTSCNFDGSFRYECQDTANWEKAECNPPICETTGTCSRDLVGQEVWDEYQKTKVKNG
Ga0255147_100026613	F003582	N/A	MKTYKVKLEIEAEVQAFDENDAVDYLNDIFGVDDEVRNVKVVSVKEK
Ga0255147_100026629	F076961	N/A	MVEEYLQEKVRRDIIKEISNLELPNEWKPQQVIDYIIRKINKK
Ga0255147_100026638	F085211	GAG	MWRRILRNFLDDSIVEHKSRPPLRWIANWAGSIASKNMLELSYMEDEGLDKGFRYKYYGWLWDTFWPIYSKYGTFYRLNMDMSGPGWDDYDENGVPYWEKTGTIDPDYDYDEFHWDYIDEETGDAFKVINFGGKE
Ga0255147_100026641	F004666	AGGA	MTTKREYLAQKGITVGRRGRFSAAAKQALSEAEKNGVKFSAETKQAKN
Ga0255147_100026643	F012013	AGGA	VAELDLLEQTRRDDVFKDLVEVIDKLDSIPVFPSLVWTWSLSIIKDIYDNNKYEDLAVNDYVDEAVPTGVTLKQIWDKFWDDVDGLGINMDLGGEIIEEVIRDWMRENDFLVSLDEDGWLNERNEPDWNVLDD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0255147_1000266

Overview

Ecosystem & Geography

Associated Families

Sequences