NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1000186

Scaffold Ga0255147_1000186


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1000186 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24243
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (86.84%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002827Metagenome / Metatranscriptome527Y
F005146Metagenome / Metatranscriptome410Y
F019314Metagenome / Metatranscriptome230Y
F020162Metagenome / Metatranscriptome225Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_100018617F019314GGAGGMNKKGGREKAPMQQPTKGKMDTAKPKGPGKVDFGYAPAGRKGKKA
Ga0255147_100018618F020162GAGGVDENKDDVPRSITLADFLVVITSFFVNIIRSFEALATDILDVAIYNANRKTKVSRAWEQFTQDLEKMEDNNG
Ga0255147_10001864F005146AGGAGGVKLTNFYEVMDRKGDIAWGGASVTDAVEWFRRGLDNSIFISVWNEEDIEEPVLVTDKIEVTALVLATITSERSR
Ga0255147_10001865F002827GGAGGMNKEYYQAKADLCRDLAVKQMVEGDSKEAGKNLIRMVNALNELNLINYKEEKASETD

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