Scaffold Ga0255147_1000186

Overview

Basic Information

• Taxon OID: 3300024289
• Scaffold ID: Ga0255147_1000186
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24243
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (86.84%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002827	Metagenome / Metatranscriptome	527	Y
F005146	Metagenome / Metatranscriptome	410	Y
F019314	Metagenome / Metatranscriptome	230	Y
F020162	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_100018617	F019314	GGAGG	MNKKGGREKAPMQQPTKGKMDTAKPKGPGKVDFGYAPAGRKGKKA
Ga0255147_100018618	F020162	GAGG	VDENKDDVPRSITLADFLVVITSFFVNIIRSFEALATDILDVAIYNANRKTKVSRAWEQFTQDLEKMEDNNG
Ga0255147_10001864	F005146	AGGAGG	VKLTNFYEVMDRKGDIAWGGASVTDAVEWFRRGLDNSIFISVWNEEDIEEPVLVTDKIEVTALVLATITSERSR
Ga0255147_10001865	F002827	GGAGG	MNKEYYQAKADLCRDLAVKQMVEGDSKEAGKNLIRMVNALNELNLINYKEEKASETD