NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247670_1003112

Scaffold Ga0247670_1003112


Overview

Basic Information
Taxon OID3300024283 Open in IMG/M
Scaffold IDGa0247670_1003112 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3288
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003773Metagenome469Y
F094447Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0247670_10031122F003773N/AMKAITTRIQKFSRPGVILMATVVAIITSIVVANATQTITTPNAAFITYSLAFGANSAAITPAASRAVLVMGRDTVGGVGQVSLSQTPGIGISWVGLESLSPAAITSGNSSTGGTHIVFISGEHFVDIQTASATTIRIHNASGSPRVSTRIEQTRTRAEAVPLEACEWS
Ga0247670_10031123F094447AGGAMHKTIVPRSFSSFGHAFSFLDLSARRLGRLAARTPKRLSLAIRYKLIGKLNKARLSVWAWKQKASISIYRRSVINVRPYSVSSYEIELCLRTDSARPLARSYCLVIRELGARPHFQSLCVPVGMKFVAALMAALHQIEDDPDHQGRISLTNLLVLTCEPPQYVIGDGKAACFVFPVLDNLREFANAMESAIASKS
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