NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255205_1000357

Scaffold Ga0255205_1000357


Overview

Basic Information
Taxon OID3300024276 Open in IMG/M
Scaffold IDGa0255205_1000357 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepA_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7917
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Louisiana
CoordinatesLat. (o)29.8571Long. (o)-89.9778Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001279Metagenome732Y
F014973Metagenome / Metatranscriptome258N

Sequences

Protein IDFamilyRBSSequence
Ga0255205_10003572F001279GAGGMSASTTIEVVGIKKTINSLRKIDPQLQKDFKADATAIAQPAIQAGKAVYKDLPLSGMRYAWTQNARKIFPFVPSKAANGVKMRFDTRRNAVGVILIEQKDVAAAVFETAGRANANKLGNALGFVGAGRTRLIGPAVYKARRGIEAEMTKMIAKTMRTVQSEL
Ga0255205_10003573F014973AGGAMRLKLKVDLQDGTAPLELTTNMFVICEWEKTEGRKISDGKGIGYTDLVCWAYNLLKLSGEKMPATYRDWVKANPNMTIEAIDETNPNHTA

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