Scaffold Ga0255205_1000357

Overview

Basic Information

• Taxon OID: 3300024276
• Scaffold ID: Ga0255205_1000357
• Source Dataset Name: Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepA_8d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7917
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Louisiana
• Coordinates
  • Lat. (^o): 29.8571
  • Long. (^o): -89.9778
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001279	Metagenome	732	Y
F014973	Metagenome / Metatranscriptome	258	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255205_10003572	F001279	GAGG	MSASTTIEVVGIKKTINSLRKIDPQLQKDFKADATAIAQPAIQAGKAVYKDLPLSGMRYAWTQNARKIFPFVPSKAANGVKMRFDTRRNAVGVILIEQKDVAAAVFETAGRANANKLGNALGFVGAGRTRLIGPAVYKARRGIEAEMTKMIAKTMRTVQSEL
Ga0255205_10003573	F014973	AGGA	MRLKLKVDLQDGTAPLELTTNMFVICEWEKTEGRKISDGKGIGYTDLVCWAYNLLKLSGEKMPATYRDWVKANPNMTIEAIDETNPNHTA