NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224564_1021375

Scaffold Ga0224564_1021375


Overview

Basic Information
Taxon OID3300024271 Open in IMG/M
Scaffold IDGa0224564_1021375 Open in IMG/M
Source Dataset NameSoil microbial communities from Bohemian Forest, Czech Republic ? CSU5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1176
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0448Long. (o)13.618Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002784Metagenome / Metatranscriptome530Y
F086040Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0224564_10213751F002784N/AMNEFTDKNEQAFLDACGAIGVKPNAMVNTQNERYLVSEFLENPVSWLETESLYHSYTTRGEAQEVAYGIDRMISEGAPVGQSKLFPRPKHSSALSDTAFGS
Ga0224564_10213752F086040AGGAGGMAINVKPLGDRVDPHADRYGHPEGVNLTTLMPGIYDHVVAAPHCDRYGHVEGNDPRQKVAYEAIVVN

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