NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228661_1034040

Scaffold Ga0228661_1034040


Overview

Basic Information
Taxon OID3300024266 Open in IMG/M
Scaffold IDGa0228661_1034040 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 75D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)929
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022080Metagenome / Metatranscriptome216Y
F031507Metagenome / Metatranscriptome182Y
F040113Metagenome / Metatranscriptome162N

Sequences

Protein IDFamilyRBSSequence
Ga0228661_10340401F031507N/AMIKVNDKIKFENKYGQIQEGIVTDNNYQCEFDADLNGCIRVEVDYGSSIIGTVNTLIDKSQVI
Ga0228661_10340402F022080N/AMIKEMNLGLVKMNESKTELYGVQYYKSKWERNLGDTLTIDGEKWLVGIIGDTKNGVISSLNDIVKKHNSITNKKKYQQRKEEKFIMNNILNNVMKELNL
Ga0228661_10340403F040113N/ARICSMRIGYKKFKEIKKWYGSSNFEIGYDSYFTQGRGITLRFGYWQKVDFEGLHEILPHYCKVTENIVDEDDDCGTLYNYNITDDRIY
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