Scaffold Ga0209976_10001014

Overview

Basic Information

• Taxon OID: 3300024265
• Scaffold ID: Ga0209976_10001014
• Source Dataset Name: Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00157 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16954
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: near North Sumatra
• Coordinates
  • Lat. (^o): 1.759
  • Long. (^o): 96.774
  • Depth (m): 1855

Associated Families

Family	Category	Number of Sequences	3D Structure?
F099319	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209976_1000101411	F099319	N/A	MLKEKEHWHRMASSKTKHNRQSILQLSEMAHVQEALMASAEAQQRAGKPFDIFRPIRETPLSVFFDKTNPQGFEEGRLNPNLPAIWKHRYGIRIGDEARGNMRIGGRDLKETVSVPNTLSALKIADEILEGAEPWSDWKQYARLIDMDAPKVNVPLTKYTDTVGGGPSSSAQKGLEIYTESGGVPPAIGGKVTTVELDTSGTNNSFRGTISVNRNDVKDNNFLSVEQSLKNAGNEFYFMIGKKIIDTLVDGLTATAGPNVESKANLANNTPVQEELEALVEVIRSRFPGQQRNRADTMFINPSDAALTVKTASTGGFYPFFNRFELGPTDDTDVINNSGLAQSLGLRAVWETPQIAAGSVLITKRDIAEVVGLREDLTIENFDLTVGGLYQTDLVVRIDVQEAHSDVGAFLITDYEVQ