Scaffold Ga0210003_1055113

Overview

Basic Information

• Taxon OID: 3300024262
• Scaffold ID: Ga0210003_1055113
• Source Dataset Name: Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2000
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.622
  • Long. (^o): 18.254
  • Depth (m): 437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018697	Metagenome / Metatranscriptome	233	Y
F090338	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210003_10551131	F090338	AGGAG	MTKTDPVVISAEDIWGAAAFATRINEGYLKEDEYSWNTHRLTKHANRDVAKKALREGTVTEADRKEGVEARHFLHSRLTMKALSKRLTDFEAGLAKAVSLDEFVIPQDRMMIGIVNSQIVSYHRQLREESMTKDAVWGYVSEVGMRVDIEVTPTARFWVDRYDTFRYNSITKDGYK
Ga0210003_10551136	F018697	N/A	TSMMDANGYTQIVSRYLNKRHGVPFEKFYERLLDYGLETPDSAFYPWLHQWKGYADKLEFNMFLAGLTYSPVMQSLGLDRRQQTYQDIYTVAQEFAPDDALLQDVMIVQERQQTIFDHADTTEITLNANVYEYSLGKEELDIAPTNYVFHRAYPPKGTNPSWVEWMNSTRKNKKWQARVEKITEKTTLFA