NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210003_1031985

Scaffold Ga0210003_1031985


Overview

Basic Information
Taxon OID3300024262 Open in IMG/M
Scaffold IDGa0210003_1031985 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2927
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)58.622Long. (o)18.254Alt. (m)Depth (m)437
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F053077Metagenome / Metatranscriptome141Y
F053753Metagenome / Metatranscriptome140Y
F098653Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0210003_10319852F053753N/AMNHQLKYGYSQLGTNILVKINCKMSNQQAIELEKKFPEICIWQTRNGYRIEGAFNTKQNNVYVYDKFEDFKLSLALNLNDFKINKLIDKNQALLNQGNLQLSVVDLDII
Ga0210003_10319855F098653N/AMCNTITSVLGFDLDAEITDNEGNVIASGTTCNYIPEEKPDYVFNIDYYNKWTNFNEGLLNKIRDYKKYN
Ga0210003_10319856F053077N/AMLYQLPNGKVIHLTVEQYLDLTDLDIQHLIALDAGDHMINPFSESAVNVNTKEKYYDFDYVSLDDDEIQNYKSDDQPFDDIIDLSGPLDN
Ga0210003_10319858F000716N/AMEKFKQDLQNYQINSKTYVKYDTDGLNQYQNYLYKRALYGLSSLTEQELETMCSKKKQRIINVYKRAQIVLNKLKQDITISYSNFIFKTLFPNSPITEYLLSDTETDTSFKNTLTFRDLDINKDKIITIFMSE

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