Basic Information | |
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Taxon OID | 3300024262 Open in IMG/M |
Scaffold ID | Ga0210003_1031985 Open in IMG/M |
Source Dataset Name | Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2927 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli) |
Source Dataset Sampling Location | ||||||||
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Location Name | Baltic Sea | |||||||
Coordinates | Lat. (o) | 58.622 | Long. (o) | 18.254 | Alt. (m) | Depth (m) | 437 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000716 | Metagenome / Metatranscriptome | 923 | Y |
F053077 | Metagenome / Metatranscriptome | 141 | Y |
F053753 | Metagenome / Metatranscriptome | 140 | Y |
F098653 | Metagenome / Metatranscriptome | 103 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0210003_10319852 | F053753 | N/A | MNHQLKYGYSQLGTNILVKINCKMSNQQAIELEKKFPEICIWQTRNGYRIEGAFNTKQNNVYVYDKFEDFKLSLALNLNDFKINKLIDKNQALLNQGNLQLSVVDLDII |
Ga0210003_10319855 | F098653 | N/A | MCNTITSVLGFDLDAEITDNEGNVIASGTTCNYIPEEKPDYVFNIDYYNKWTNFNEGLLNKIRDYKKYN |
Ga0210003_10319856 | F053077 | N/A | MLYQLPNGKVIHLTVEQYLDLTDLDIQHLIALDAGDHMINPFSESAVNVNTKEKYYDFDYVSLDDDEIQNYKSDDQPFDDIIDLSGPLDN |
Ga0210003_10319858 | F000716 | N/A | MEKFKQDLQNYQINSKTYVKYDTDGLNQYQNYLYKRALYGLSSLTEQELETMCSKKKQRIINVYKRAQIVLNKLKQDITISYSNFIFKTLFPNSPITEYLLSDTETDTSFKNTLTFRDLDINKDKIITIFMSE |
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