Basic Information | |
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Taxon OID | 3300024262 Open in IMG/M |
Scaffold ID | Ga0210003_1000016 Open in IMG/M |
Source Dataset Name | Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 223235 |
Total Scaffold Genes | 259 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 50 (19.31%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli) |
Source Dataset Sampling Location | ||||||||
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Location Name | Baltic Sea | |||||||
Coordinates | Lat. (o) | 58.622 | Long. (o) | 18.254 | Alt. (m) | Depth (m) | 437 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002321 | Metagenome / Metatranscriptome | 571 | Y |
F045767 | Metagenome / Metatranscriptome | 152 | N |
F057390 | Metagenome / Metatranscriptome | 136 | N |
F061838 | Metagenome / Metatranscriptome | 131 | N |
F066233 | Metagenome / Metatranscriptome | 127 | N |
F080617 | Metagenome / Metatranscriptome | 115 | N |
F081877 | Metagenome / Metatranscriptome | 114 | N |
F099229 | Metagenome / Metatranscriptome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0210003_100001610 | F080617 | AGGA | MGNNKLKWSLEKLFNSLGRNMAMKYYGFDSKYEVVKIINVKTGDEVTDFEGDIDYEVIVKSKDDLPEIFDVKIEPLWRYGKFAQPMDLQFNLEHITKYISPSIIVSLVTPEWKEGDLEYTSVKSFEKKWGRSLDLPADDFQKNPSRWVELSNGSVVDKITGNSFPLMSNGLIDKTEVWNIARIDEDEWWDSLDNNDKQNLTDAFSK |
Ga0210003_100001612 | F099229 | N/A | MDNEIDKIVELGKVLLNTPTLRSIYKDKFEINSIDFEFIEKTTSSQFTSKYEYYIFGATLYTDIQVNFDERIENGELKGYMDIEPELWNYGLDPIYLADIIIPDQILNIILPKGGPRIAIELTIIGDKGQIIWRDDMFGGANGMPMVGLTPKEVN |
Ga0210003_100001613 | F066233 | N/A | MEIEKNIDDELRAEAQEKGKIATKILDALVFSKFGGIEYSMIIRKQRQNSYSSPRTNPIYFEFDVDIDVDKTFEPSPTYDKKYEDYIYEIGEHIERALRYVNLHDYMAEPMFTYVNDNLVDNEIDRLENKLISYLQSQYEGLSYDSIREADIGYYFYKGETDNPYMRVEFVGQPPIIDGDRQSTDTIEEREFFSCEVLEEIMRDLFDRSPLSLSYDGENYTCQ |
Ga0210003_100001618 | F061838 | GGA | MNNMFNKIMPKSYDDIAKYSNMVMDHEVLDGKIKDIELDFEPSKEPIKYGGYEMIQPGTLVINVILNTEGFYEISDSVPAIQDTFKLRPELEADSFLEFNGYEFIKNILFPYIEKKFLRLMGLSLGDVPYVDFNLVNHKGETILTYDEDLDTFIGSKNSSVWKKMS |
Ga0210003_1000016213 | F057390 | N/A | MEYKKIFPDMFDDTDIDVWKNRNIRKEFLSYEWDMMVQEVAPDVFEFPFLNTNFCDNLVSILKTVNWDQVNRWGTPVYSTNLKTFNLEKVMTHLVHDYIFSIVQKEWHLEGKKWKLLQPDNNILKLEKGQDIRMHHDYVHISLYCKLDNDSDGGELVFSKYGKTITPKQGYVYMYPGQITHRYGMKRVSNGDRYFLMTYCTSD |
Ga0210003_1000016231 | F002321 | N/A | MLDLNKEMAWVTFMNNGWQTKWFPVLCPITGEQQEFDGELTMNHCRSQFNNKDNWVSFGIAPTSQMIIENSVRDNL |
Ga0210003_100001670 | F081877 | N/A | MNTKKDMEFKSEEEFNRVAKKAVQILLYVVESKSPILRKLRATNFISKIYGANQNGVVYFEIEVPFTVDDPDHGPFCNELDKILSGIQNTFGNYHLNSNVEFILKTEEGDDMIGFLNSCSFDWTDHEDEYNGKANYGFEYNWSSID |
Ga0210003_100001691 | F045767 | N/A | MFGKNKINKMGIKDSIRKNIQILQEEKKVTLTEEKIVKGRFSMVPKNINKHSTIQNNKTFNVLFNEIRVLKSRGINQKLINENLVQVLSQMFDEEGPRFLDVVKEKLAQYLKSKLQLTDIEQEILVSAIGNTEMDEVSELFNDPRFLAQKISQAYSEDMGGKYSMVNMDNSQEMVKKLEDTFVDKLKPVIGDVNSKMELKLKDIRDNMLS |
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