NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210003_1000016

Scaffold Ga0210003_1000016


Overview

Basic Information
Taxon OID3300024262 Open in IMG/M
Scaffold IDGa0210003_1000016 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)223235
Total Scaffold Genes259 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (19.31%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)58.622Long. (o)18.254Alt. (m)Depth (m)437
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002321Metagenome / Metatranscriptome571Y
F045767Metagenome / Metatranscriptome152N
F057390Metagenome / Metatranscriptome136N
F061838Metagenome / Metatranscriptome131N
F066233Metagenome / Metatranscriptome127N
F080617Metagenome / Metatranscriptome115N
F081877Metagenome / Metatranscriptome114N
F099229Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0210003_100001610F080617AGGAMGNNKLKWSLEKLFNSLGRNMAMKYYGFDSKYEVVKIINVKTGDEVTDFEGDIDYEVIVKSKDDLPEIFDVKIEPLWRYGKFAQPMDLQFNLEHITKYISPSIIVSLVTPEWKEGDLEYTSVKSFEKKWGRSLDLPADDFQKNPSRWVELSNGSVVDKITGNSFPLMSNGLIDKTEVWNIARIDEDEWWDSLDNNDKQNLTDAFSK
Ga0210003_100001612F099229N/AMDNEIDKIVELGKVLLNTPTLRSIYKDKFEINSIDFEFIEKTTSSQFTSKYEYYIFGATLYTDIQVNFDERIENGELKGYMDIEPELWNYGLDPIYLADIIIPDQILNIILPKGGPRIAIELTIIGDKGQIIWRDDMFGGANGMPMVGLTPKEVN
Ga0210003_100001613F066233N/AMEIEKNIDDELRAEAQEKGKIATKILDALVFSKFGGIEYSMIIRKQRQNSYSSPRTNPIYFEFDVDIDVDKTFEPSPTYDKKYEDYIYEIGEHIERALRYVNLHDYMAEPMFTYVNDNLVDNEIDRLENKLISYLQSQYEGLSYDSIREADIGYYFYKGETDNPYMRVEFVGQPPIIDGDRQSTDTIEEREFFSCEVLEEIMRDLFDRSPLSLSYDGENYTCQ
Ga0210003_100001618F061838GGAMNNMFNKIMPKSYDDIAKYSNMVMDHEVLDGKIKDIELDFEPSKEPIKYGGYEMIQPGTLVINVILNTEGFYEISDSVPAIQDTFKLRPELEADSFLEFNGYEFIKNILFPYIEKKFLRLMGLSLGDVPYVDFNLVNHKGETILTYDEDLDTFIGSKNSSVWKKMS
Ga0210003_1000016213F057390N/AMEYKKIFPDMFDDTDIDVWKNRNIRKEFLSYEWDMMVQEVAPDVFEFPFLNTNFCDNLVSILKTVNWDQVNRWGTPVYSTNLKTFNLEKVMTHLVHDYIFSIVQKEWHLEGKKWKLLQPDNNILKLEKGQDIRMHHDYVHISLYCKLDNDSDGGELVFSKYGKTITPKQGYVYMYPGQITHRYGMKRVSNGDRYFLMTYCTSD
Ga0210003_1000016231F002321N/AMLDLNKEMAWVTFMNNGWQTKWFPVLCPITGEQQEFDGELTMNHCRSQFNNKDNWVSFGIAPTSQMIIENSVRDNL
Ga0210003_100001670F081877N/AMNTKKDMEFKSEEEFNRVAKKAVQILLYVVESKSPILRKLRATNFISKIYGANQNGVVYFEIEVPFTVDDPDHGPFCNELDKILSGIQNTFGNYHLNSNVEFILKTEEGDDMIGFLNSCSFDWTDHEDEYNGKANYGFEYNWSSID
Ga0210003_100001691F045767N/AMFGKNKINKMGIKDSIRKNIQILQEEKKVTLTEEKIVKGRFSMVPKNINKHSTIQNNKTFNVLFNEIRVLKSRGINQKLINENLVQVLSQMFDEEGPRFLDVVKEKLAQYLKSKLQLTDIEQEILVSAIGNTEMDEVSELFNDPRFLAQKISQAYSEDMGGKYSMVNMDNSQEMVKKLEDTFVDKLKPVIGDVNSKMELKLKDIRDNMLS

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