Scaffold Ga0233439_10092192

Overview

Basic Information

• Taxon OID: 3300024261
• Scaffold ID: Ga0233439_10092192
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 1575
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F048916	Metagenome	147	Y
F056153	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233439_100921922	F056153	GGAG	VDNPAELASFIESVGVPVATALGLGGALWWLIKYVLGSIVEKITEAQAQTEADIKDLKGIVIALIDKTTAAQSDLIRLDTMIRVRYGLAPDEKRIGRNPDDKVK
Ga0233439_100921925	F002078	GGAG	MDIAAMFEGQGWFEIAGQVVLVFTALTGALPDKFVQKIPVLSTIWPIFNWLAGNVFNNINHPKGMAASKEVEKEIDEAKAKVRERTDMPDVLDGM
Ga0233439_100921926	F048916	N/A	VSVLICLTFLTGCSVGLLSELVAPVTNFGLGLYNADTYYSKECAWYEEIKLTPATKQWLTDSKPPAGVVKDLAKVARNNDIYKEV