NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247679_1071264

Scaffold Ga0247679_1071264


Overview

Basic Information
Taxon OID3300024251 Open in IMG/M
Scaffold IDGa0247679_1071264 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)583
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001368Metagenome713Y
F060943Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0247679_10712641F060943GAGGMAADMNNLSEEAQSLARVPLFKRLEPHELEHLAEEIDQVNYKAGDTIFNEHDRGDA
Ga0247679_10712642F001368N/ADMDRNSATTERLRNLISKIEATTKSGELHWERQAGSAHRYARLNNNLLILGPATPVSDSSVPRYLFITPFDSPDCIEVNSDDAELGAAVIELVKTVEDRSQNEPATDPFAVTDQLLERLESM

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