NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247679_1071069

Scaffold Ga0247679_1071069


Overview

Basic Information
Taxon OID3300024251 Open in IMG/M
Scaffold IDGa0247679_1071069 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)584
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014296Metagenome / Metatranscriptome264Y
F025095Metagenome / Metatranscriptome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0247679_10710691F014296N/ANCHLTGTQYGATAVSQCSRLTVPAGTIIYYLYPSQAALSAGLSTFLASVHFHKQRECTTGNDFTDFLTECQTAFHNQTPFMTGHIAEYTSTSNDPIIASTDNQQNVMAVLVGTNPGDLLSYWKQLTWIKD
Ga0247679_10710692F025095N/APAAPATRTQTGPAVGAVALALGVLLLVIGAASHIGVVVIGGLVLGAWGMWRLVTATGRGGMPPG

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