NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228676_1000016

Scaffold Ga0228676_1000016


Overview

Basic Information
Taxon OID3300024248 Open in IMG/M
Scaffold IDGa0228676_1000016 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 48D_r
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40804
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (17.19%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003253Metagenome / Metatranscriptome497Y
F100883Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0228676_10000161F003253N/AMKSITTLSQSAFDVKKAEAIGNELMRKEITLSEFNVVDNNHIDIDGVKIEVTDKAFGKLLGRLRIPKAFAKRFSEGFGNDGLRQLITMMKSMKSSKNDQTVTLLVDPSTRKITDILPAGYASISNESFIDFASRYIDQYNLGVTHMGSSQYGGTQINCVSPQGMFNVPGMQNEVFNTGVTFRNTPSRGLEVSPYLERLICANGMTSTAFAENYGLHNLNDKNINEFNEHMIRMASTNFQPVGLAENIKKAHDTDASLAEMQRAASSL
Ga0228676_100001625F100883AGAAGGMNFHNIIFKRNDGLGGFRSRTHFTNGLSLSVSAGSGIYSNPREDRSSINQFLTFEIAVFDADDNFITKTFFPDGHDDVVGWLSRDEINDLMNRIANHSKPQKDIPGFEGTLDQLSKLKI
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