NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247724_1003376

Scaffold Ga0247724_1003376


Overview

Basic Information
Taxon OID3300024239 Open in IMG/M
Scaffold IDGa0247724_1003376 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2615
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.7Long. (o)-98.594Alt. (m)Depth (m)3933
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041008Metagenome / Metatranscriptome160N
F046173Metagenome / Metatranscriptome151N
F054566Metagenome / Metatranscriptome139N
F055421Metagenome / Metatranscriptome138N
F073069Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0247724_10033761F073069N/AMTSKDTVLAKREVGIKEIIENIKKRPNLPYGERKTEITKSLFLERTNKEVKQLKFKTALYLTELERGDEEVKEISNYIITHYLDEKSNTTSKDSEIKNINIFQEKLKKITNSIAKIAKEKVEVANKQLNKDMSKETRSILKENFILMYEINIRLVDLKLMYEYIITKMISAEITEGM
Ga0247724_10033762F046173GAGMLSLKDREVYEIIIVEIENYKSSDHDKMSKRINYAAKSPALDTILNNIFLKTAMINLELKYYYEEVIGVSKYILEQYLTGKSIGVQLYIKEIDTFYKEKLIGRLDKLKDTIRNDIPTRLSEIQGTHQRIRKDQEKLSKMKQDPQYNDMQRWGIQLSLERVIEIDSKLINLTKLLNYITEKQKE
Ga0247724_10033763F041008N/AMPIKDEAEMARTLNKLIIVDIEEGYRVPVRRKRQEISDMLAENRYNDPEVWQALMDYDILLGELLQRYEEVESVMEHLFEYYLTSEYSQKLRIPLKGAKPVMNDRLHFQNKLEEVLEQRSSVEKNKSVIALHSVTHTVERELRIVGDHNMVTLYKIDNELLNLKMMYEYLIENFNPHVVTKG
Ga0247724_10033764F054566AGGMEKEKNKVEITLDKLRLLRVKNTQEKQAISYIILEEDIEPILRQSLVCNVRLLETIDHLLGLLEGIGTIITKEKPIKVKQTNKDAN
Ga0247724_10033765F055421N/AMEEFINPYKEINIEVHLVWIAIATTANYIPMEGIVGKCIRSYLALVVWLLIILNRKRSLWQRGAILIIYLKLNSMARIIENLSYSMTVIKIGMLGVSLEQIICNNIIESVKMVILLHFLTVAICLPSGEEIELNLIKLTIGH

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