Basic Information | |
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Taxon OID | 3300024239 Open in IMG/M |
Scaffold ID | Ga0247724_1003376 Open in IMG/M |
Source Dataset Name | Subsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2615 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Oklahoma | |||||||
Coordinates | Lat. (o) | 35.7 | Long. (o) | -98.594 | Alt. (m) | Depth (m) | 3933 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F041008 | Metagenome / Metatranscriptome | 160 | N |
F046173 | Metagenome / Metatranscriptome | 151 | N |
F054566 | Metagenome / Metatranscriptome | 139 | N |
F055421 | Metagenome / Metatranscriptome | 138 | N |
F073069 | Metagenome / Metatranscriptome | 120 | N |
Protein ID | Family | RBS | Sequence |
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Ga0247724_10033761 | F073069 | N/A | MTSKDTVLAKREVGIKEIIENIKKRPNLPYGERKTEITKSLFLERTNKEVKQLKFKTALYLTELERGDEEVKEISNYIITHYLDEKSNTTSKDSEIKNINIFQEKLKKITNSIAKIAKEKVEVANKQLNKDMSKETRSILKENFILMYEINIRLVDLKLMYEYIITKMISAEITEGM |
Ga0247724_10033762 | F046173 | GAG | MLSLKDREVYEIIIVEIENYKSSDHDKMSKRINYAAKSPALDTILNNIFLKTAMINLELKYYYEEVIGVSKYILEQYLTGKSIGVQLYIKEIDTFYKEKLIGRLDKLKDTIRNDIPTRLSEIQGTHQRIRKDQEKLSKMKQDPQYNDMQRWGIQLSLERVIEIDSKLINLTKLLNYITEKQKE |
Ga0247724_10033763 | F041008 | N/A | MPIKDEAEMARTLNKLIIVDIEEGYRVPVRRKRQEISDMLAENRYNDPEVWQALMDYDILLGELLQRYEEVESVMEHLFEYYLTSEYSQKLRIPLKGAKPVMNDRLHFQNKLEEVLEQRSSVEKNKSVIALHSVTHTVERELRIVGDHNMVTLYKIDNELLNLKMMYEYLIENFNPHVVTKG |
Ga0247724_10033764 | F054566 | AGG | MEKEKNKVEITLDKLRLLRVKNTQEKQAISYIILEEDIEPILRQSLVCNVRLLETIDHLLGLLEGIGTIITKEKPIKVKQTNKDAN |
Ga0247724_10033765 | F055421 | N/A | MEEFINPYKEINIEVHLVWIAIATTANYIPMEGIVGKCIRSYLALVVWLLIILNRKRSLWQRGAILIIYLKLNSMARIIENLSYSMTVIKIGMLGVSLEQIICNNIIESVKMVILLHFLTVAICLPSGEEIELNLIKLTIGH |
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