Scaffold Ga0247724_1000319

Overview

Basic Information

• Taxon OID: 3300024239
• Scaffold ID: Ga0247724_1000319
• Source Dataset Name: Subsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11912
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (33.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.7
  • Long. (^o): -98.594
  • Depth (m): 3933

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000744	Metagenome / Metatranscriptome	909	Y
F004314	Metagenome / Metatranscriptome	444	Y
F013172	Metagenome / Metatranscriptome	273	Y
F021760	Metagenome / Metatranscriptome	217	Y
F048268	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247724_100031910	F021760	GGA	MCGPAFEYTFEDFLSDASDAEWDEWESEANRLELPLDYYIQEFVGQSA
Ga0247724_100031912	F004314	N/A	MYDDYDLDYTFSNDYTLDEYTYADTGILDLDEDYARDTHDYQDLAYRHYA
Ga0247724_100031923	F000744	AGGA	MMTETTVNLNVHEMGILLSALQNLENIDEIHIARDYGSVPALYNKLYSLWEQMDRSQTGLRNDVVPSF
Ga0247724_100031924	F048268	N/A	MKLSNSSITKIADALKPAIINYIYEDEGFTEYMQTAVVEGIKDTLGDMDDDLLFEIGMLIFDRIELK
Ga0247724_100031925	F013172	N/A	MSYYWATKLNTATNRRIEKLESEGVKVDTTTHTGRQVIGYNYLELAFDESYETL