NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247664_1023728

Scaffold Ga0247664_1023728


Overview

Basic Information
Taxon OID3300024232 Open in IMG/M
Scaffold IDGa0247664_1023728 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1427
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045645Metagenome152N
F063304Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0247664_10237281F045645N/ALRSLCLRESTNKQTQMKLQETTLRMLKRVAGVFHVRPIIPDRALTLRKGRRGHELIQNDGEAMRVVAVSDDRPGLLSFAAINGIPVKNYTDMAVSKPESNGKVVPGVPELSM
Ga0247664_10237282F063304GGAGVRAYNGIMRIGTPTAGAAQSPHIYNLLDHRLSQQGVVLHQLMKDYAAAVPSQPTAPEELVEQVTSVFGKWSADPAQRVMPDTPLAQEHLRLLDDICKIQGADSAARLESTLVRVVANQFARNLGCPLRLPDENKLIPLFEVKPANAYSALAQRTALLGMQPHDRVKEWVASNREAFQHKPTSDVGYLRMAQKFCGTWPADSNTGDPFQKSMAAFLDGVALSTNRSHAVVVQSSLVDTFARSIRRQARDLGLDRPAQTAPAISMA

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