NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247664_1000027

Scaffold Ga0247664_1000027


Overview

Basic Information
Taxon OID3300024232 Open in IMG/M
Scaffold IDGa0247664_1000027 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41445
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (70.15%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016408Metagenome / Metatranscriptome247Y
F026598Metagenome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0247664_100002721F016408GAGGMAVVESNVTALELERVIPKIRTVFERDDKFYANIKKQDVEVISYRQMRIPLELRPGGSFQYFGADGGDLGRGGGPQWDKAVLTPVFMSENIEYTKLVEWSTNSDRKAITAAVRRLVATATDELRRQLDSQMMQAGNGQLGTVTSVATAGGVDTYTCTTDGFGVRLMRFGQTVQLYNSTLATLKGSGVITGWDVENKTVDVTPAIAGSTGGDLIVVNGISSPTSLPALFGVPYHHSSASTGTWLGFSRSSTPEIRANRVNASSAALTLPLPRLAINKIGNRTGIDNDFKPNAWMHPAQKQAYEEIGQLISIIQKQPKDESLDMYFDKMQMAGAPVKESYNWDKTRIDFVTDSIWGRGETLPLGFYKTDGRNIFEIRGASGGVATADIFYMVVGMQVFVNNPAACAYIDTLAVPSGY
Ga0247664_100002750F026598AGGAMPTIEYGQRDILRGKTVDPAWYRMRIDDVGEALSKDGKSTNYPVEGTILFNGDTGSTTFQGVPIDWNFNSKAIGFSIGFLAAFGVTAEAGKRFELANAIGKELDVFVENDTWQGRVVNRVNHKYRAPKQEVSAVTESAPA
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