Scaffold Ga0228633_1029136

Overview

Basic Information

• Taxon OID: 3300024228
• Scaffold ID: Ga0228633_1029136
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 41D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1476
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001655	Metagenome / Metatranscriptome	656	Y
F002858	Metagenome / Metatranscriptome	525	Y
F071124	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228633_10291363	F001655	GAGG	MKQPENDHTKMFGNDGPIGNDAEIIVYYEQHGPAEPVLRIPFWYYKEELGMYEHFEASVHRTAKALKESYTYWPEGYIHVQTIINDEYVNMI
Ga0228633_10291364	F002858	AGGAG	MAIDEKSIYVVDGGDYSIYCLGYTQARSVTNDIMRLDPWGGIPFVLRKDLELSLDDRGNVVMSKSTLDKILFLASDELPESEGDA
Ga0228633_10291366	F071124	AGG	MTYAEFELGYYMGDSEDDSGPPEDPETQAMLEHLIEYETEMFKLECRRRYKGCTYRQLRSLLINLHGEDWKNAL