Scaffold Ga0228633_1000181

Overview

Basic Information

• Taxon OID: 3300024228
• Scaffold ID: Ga0228633_1000181
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 41D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16992
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (52.17%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009033	Metagenome / Metatranscriptome	324	Y
F009243	Metagenome / Metatranscriptome	321	Y
F019396	Metagenome	230	Y
F026261	Metagenome / Metatranscriptome	198	Y
F048972	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228633_100018110	F019396	AGGA	MDIEDWKPYLKLDTVGRSCMAQQTYEPLVSPDGKTFCKNYEFPNEYQYRDEKDRPLYTDEVCDWFFDNEVKYLLKFEDKPYAPEIIDIDFINRRIFIDWYSKSCNQIMYAENKSWPQGEWRAQIKEIILDQYNEGIYKLTMYPHCHYIDSQGQMRAIDWYGCVPVDAPYIEEKYMQGIIHDTAQFRLEETGKAVDSVLNLETMFKRSLGTHVLWGDQNMSYIYKELFNA
Ga0228633_100018111	F026261	AGGA	MPKYFGTTNNIIDWDPIVSVCKECTIGDVNTPVAVIDRSEAEAEGTLLESYRDIMNTWLDAGYKLEEIKWVDYYPGEHFDIEIQNKFAEIVDAQPLRVFVSDVAPGTNVPYHWDVEDKEEEWLAQGELKRWVCFMDKPRWGSVLILEDEAFHNTAQGEIWEWDNYRSHHAGTSMGIHHQYLFHFLGRPNK
Ga0228633_100018112	F048972	AGG	MKNLGVCDTIDWDNVIKQCASVEPEFVGPSHKRGDTIPGLDPILDMWEEAGYKTVHEGGTAGWDMFIPGKQFDQSIADAWNEFYGLECDNIWISRVWPGRFAPIHWDVHDDEVNLPDCPRYHCHIGKPQWGHIFIADEELFYNQPQGTTWEWTDRKIWHAGTNCGTQPKYIWNAW
Ga0228633_100018119	F009243	N/A	MHNHFEYYYNNVPDKGMCRNNLIYTSLISKQKQVFCQWYYNDEKYHGGHNQVVDPSLMDEKFEREIKFLRLMQKEYPQHVPIFSIDEKHRKVYLEIDGPDMWELAGCQGTDYSKVLPNWDEQMLEILQAHKDLGLTKYSLHPSSYFIVNGKLKSMNYFFTYDQTDNPISLRSVMSHISEDRQADLFPKMKANGIDVDAPTAHSNIQILAFDSFKTNFRDDVMERAKEIYA
Ga0228633_10001818	F009033	N/A	MELYLNQSWKKIGISLSGGADSALLAYLILKQSNAEIYFTTQVRMWKTRPWQGYVAQQVVRWFRFNFPHRIHHIQNLIPPELEEPTEYLIKDEYGKMKPGNRIILRAHNEYVAYQYNLDALYAGVNMNPDIDIPGKVAERDYGHIQPHFVHNGVDICHPFVYTKKDWIIKQYYENGIENLLNLTRSCEGEFAGLDYTTYEPGQDVPLCGECFWCKEREWAIEQAK