Scaffold Ga0224572_1024854

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0224572_1024854

Scaffold Ga0224572_1024854

Overview

Basic Information
Taxon OID	3300024225 Open in IMG/M
Scaffold ID	Ga0224572_1024854 Open in IMG/M
Source Dataset Name	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1150
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.0448	Long. (^o)	13.618	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F083081	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224572_10248542	F083081	GGGGG	MAYQPSWNEDEPPKDRQVLALAFAKAIKSGSGNLVRVVAAWVESNQEWRPVKVGGDTIAGTDLDVICWAELPEVPDTVGRLKEANPSRPIQVYPRPE

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