Scaffold Ga0228666_1028778

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0228666_1028778

Scaffold Ga0228666_1028778

Overview

Basic Information
Taxon OID	3300024221 Open in IMG/M
Scaffold ID	Ga0228666_1028778 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Monterey Bay, California, United States - 80D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1267
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.8313	Long. (^o)	-121.9047	Alt. (m)		Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030435	Metagenome / Metatranscriptome	185	Y
F053299	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228666_10287782	F053299	N/A	MKNYKPYYRTDKMKQDELRAAKYMGILFFTMVAFSFIGFAFVLVKAMLYMTGLFL
Ga0228666_10287783	F030435	N/A	MNNQEILDMCKRLASKYYNHQDYDDIVSEGVVLCLKMRAEGITEPYKLYYSARTAMFEYVNVGLSKFSYPKGRSGREAVQEDTTTYVDLEDVQIPAEDLFGSYELKNAVEALKKHLSKREWEVFVCLHNNNNNFTHTSKVLGVSKQAIEQAINRIKNKIVTICDVDI

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.