Scaffold Ga0224568_1003974

Overview

Basic Information

• Taxon OID: 3300024220
• Scaffold ID: Ga0224568_1003974
• Source Dataset Name: Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1460
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.0448
  • Long. (^o): 13.618

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011683	Metagenome / Metatranscriptome	288	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224568_10039742	F011683	N/A	VGDSPSLLETLIGFPGAVLRLPSSALATLDAINEVTERMDRLMTLLDQLDRGVNKAGSGIDFAALGISGAVSGLEQAVGMLDASLPSLSESASALRSLTERLSGVAMELASELPRATRSLQEISPELASVVGVLDDRFAHLDTVVTDLARLMEAVVGTIPGMRRVLRSTPSLPYEPD