Scaffold Ga0247669_1000004

Overview

Basic Information

• Taxon OID: 3300024182
• Scaffold ID: Ga0247669_1000004
• Source Dataset Name: Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 324570
• Total Scaffold Genes: 257
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 191 (74.32%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 40.4449
  • Long. (^o): -87.0297

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000131	Metagenome / Metatranscriptome	1986	Y
F006273	Metagenome / Metatranscriptome	377	Y
F015305	Metagenome / Metatranscriptome	255	Y
F019010	Metagenome / Metatranscriptome	232	Y
F020310	Metagenome / Metatranscriptome	224	Y
F022049	Metagenome / Metatranscriptome	216	Y
F022762	Metagenome / Metatranscriptome	213	Y
F023471	Metagenome / Metatranscriptome	210	Y
F090743	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247669_1000004116	F023471	AGGAGG	MLRPFTICLLFLTAALPVLAEEIVLKDGTKIVGRMTGITSDKIEVETSYGKVQLNRGDILTISFAENASAKAPDAATVKQALPKIDEILTGTQYVNRTAKFSLTLPPEWTIDPNLRNAPTTLAGLSSKDKMRFAMVIQEEYPGSMDSYREVTMLGVRRTLSNFEELSRSNATIDGKPAILVFYRGTLQKSNNLPVEFLSAFLQSGNTYTKISVWCIEPLFHDMQPTFEKIVASYRSSGHITADSTRP
Ga0247669_1000004187	F006273	N/A	MSTTPTAIAAEQAKFLPRLRGFLGAALFLALRHFPRLLQLHRNESSWAAFRFVLACFGAALVVLPLSLWNGWMTAIFGLALFVVAILLPPAETESSTDRKARELGAKTVVSGGDYQPGNAPAAGVRLFISPEHIWALDSQFHPLVVIPVAEISRLRVEAGAGGWLLQARWGDHKAEFSYHGIFAERFARLAEESILAANPSAASIVRKQRAAGA
Ga0247669_1000004188	F019010	GGA	MSASPSRGPKSPDELRREQECRDLQLSRIRIVNDLEVATNPNHRKSLEAALAHLDSKIAKLS
Ga0247669_1000004240	F090743	AGGAG	MEELQSFQAAARESGFVVANESRDHTVQWFRKMAADPSTGTHQRLCLDSVTKSATVFWTNARGLTDSKTFRGAESLREWLGANLVSS
Ga0247669_1000004245	F022049	GAG	MATPVRYQIRFEKDGASVKASYDLQVPVGGLALIASFSLGVDGKELIDQTHWIPGQVLYNGAQFATLDHPDKDVTVSFSISSSEGWTAADSNILRGDKRFDDVSFSNS
Ga0247669_1000004250	F022762	AGGA	MAEAKESELEKQAPAVDDEDQATLAAIDEGIRDAKAGRTTPLDQVRKLLPRRITGSSSPKER
Ga0247669_1000004254	F015305	N/A	MGQFALYYWRAVFTGMASMPISSRVLEAAQVQDESICGNDFEKFASLLTLTPELKETKSGLGMVKAYYSVIQQAEKIFASFSPMLAGWAEKERMLCARIAAVHIDRRLEANLIQAASIRS
Ga0247669_100000472	F000131	GAGG	MKNVSRVIRCFSARTISIGCLILAAASSLAAQEVSLRDVVTPSTVIVKDGGPVTFAIHGFIEFKSLAEMFPYIEAQTARWKGKITEEEKREVARRLLREGIESRIVSMLDERPLQALVTHTSGELREAIGRVKDPVPPGYEEAFLEVQGKWKRSLNCWSASPVIAGRVLSNWYPIEEGIRLHGAVYDSTEHFWQAVKYHPDTKIGELKALIAVLEGKDWSGWLKRLDDDPKIYLPNAYAVEFLRYNLKAERLKWFAGELEKHGLKPGDQARVVQERGETAFRFSAIEEKILWGDLADLFHLVYGLSPADDPVLKILAEHHFDGIYLSGRKMGFISEEFRSEMLEIWKVKFLEMPRFGEVIAGIPMEIRLEHFLNDGDSPDIPIPVYVEYLNRIRKMARTGR
Ga0247669_100000477	F020310	GGA	MPSNSKSKSPANDLAALLPQRLSEALLRERIIPRFVDSYVVEHGRHSLQVHAVLYRDLLNLLQREALLTVTASALEIVARGLPAEDERKAKPMKRQEASAFRQKFLAALTRHQRWNVSDALDFQSDLKMYEDLIARAGAHRRPRKSFEPANHPFVDRCAFVLDSSFLERARVAASRTLTNLESLASQEVQYTLKK