Scaffold Ga0228668_1000161

Overview

Basic Information

• Taxon OID: 3300024180
• Scaffold ID: Ga0228668_1000161
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 82D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31825
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (9.68%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001728	Metagenome / Metatranscriptome	645	Y
F001913	Metagenome / Metatranscriptome	618	Y
F007114	Metagenome / Metatranscriptome	357	Y
F011526	Metagenome / Metatranscriptome	290	Y
F018086	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228668_100016116	F001728	N/A	MNSIELRPTEKKDHYRLFINGVDMTGEQERSTFRHIIEVIDSKINVGI
Ga0228668_100016117	F018086	N/A	MSKTSYLLGEVEFRLDEIKALNQYFENVLTYDANKKLVPKKDENGNEIKKLKLQFSIFEEGRYGKNVSFTLPQSKEQRENKEPKKYVANGRVYYASDDLQGFVLKNEKQAAAPQQSVVVEDDLPF
Ga0228668_100016144	F011526	N/A	MANEEMIAVIECYIHHRKNKQVRIAKPKTPQQYLLLTKAYENCIGFFIKH
Ga0228668_100016150	F001913	N/A	MIKIILELLKETDCKEEIVQLASGKNKFPDTFKEVFVRTKQQIEWKK
Ga0228668_10001619	F007114	N/A	MSRINNEAWEKLKQQIEYYLQEDSNITDVSINYQIRIPEIGTKNYLKLSVKIDE