Scaffold Ga0228600_1015024

Overview

Basic Information

• Taxon OID: 3300024123
• Scaffold ID: Ga0228600_1015024
• Source Dataset Name: Spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 623
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.0448
  • Long. (^o): 13.618

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003000	Metagenome / Metatranscriptome	514	Y
F069590	Metagenome / Metatranscriptome	123	Y
F083628	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228600_10150241	F083628	N/A	MTVENEYKLARRAFHQNQEESIAVALAIVAIILLAGGSYILVNRLHVRSLQLVESCLYAFLASVAGIA
Ga0228600_10150242	F003000	N/A	MKADTQLGEMHDRLVDCHRQNPKEGLGDALLIWLEDPLKPRDEHGRLQVNPILLLLTIVLALVFGVFLFFSMVRS
Ga0228600_10150243	F069590	N/A	RAMQEEMGDTPELELPVAHGETGTYDLHPGETTQGVVSIRRDLKSPVVVQLIFRDGVKATVVL