Scaffold Ga0247794_10012561

Overview

Basic Information

• Taxon OID: 3300024055
• Scaffold ID: Ga0247794_10012561
• Source Dataset Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1990
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044569	Metagenome	154	Y
F049717	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247794_100125614	F049717	N/A	MTRRRVMQRLERDDLIALEVYAKLVEHHASLDESVRVAGTIIGWSLHQSDGTLDAKLEGLTVLMRDIRHLLLKNHGVRRERED
Ga0247794_100125615	F044569	GGAG	VSEKTEDKPDPATIWTGWIRKGELPGTIVGELRDSWNWVVTLAGSIDKEGGGYSLQGRLGPVPDSLRVEAIDEPTAKAE