Scaffold Ga0255050_10015269

Overview

Basic Information

• Taxon OID: 3300024052
• Scaffold ID: Ga0255050_10015269
• Source Dataset Name: Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 1429
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 50.0528611
  • Long. (^o): -123.8211389
  • Depth (m): 425

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001039	Metagenome / Metatranscriptome	795	Y
F003385	Metagenome	490	N
F015325	Metagenome / Metatranscriptome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255050_100152691	F001039	N/A	MIDYNLVLYFGIGLIVFGFVLFLVSIHFERHAEIKLFKLEQLDKAFRKAKENDNN
Ga0255050_100152692	F015325	GAG	MTKKIWLVIEKNTYGENSHSYNISKTADTIEQATTYKVHLDALNDSKNKAYFLASDISTIIDKVVYHHNKSVEEKPLVLTDEVKDTSSEMPF
Ga0255050_100152693	F003385	AGGA	MTNKIDLNNIPDNFVVTYFAKTHNGEEIEGGGKVITRNGSWFKPNTDTVGKAFISKNGVVCFIYWDNDATPDEKGNQWRMAKNPMKIKATQTIEG