NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228687_1027997

Scaffold Ga0228687_1027997


Overview

Basic Information
Taxon OID3300023696 Open in IMG/M
Scaffold IDGa0228687_1027997 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 52R (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)656
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003868Metagenome / Metatranscriptome464Y

Sequences

Protein IDFamilyRBSSequence
Ga0228687_10279971F003868N/AIKDMKKLIMSLLMTFGIFSMVSADIGVKLGVSAQIGELETSGKEVSSDGTTETAAAEQALFGTAGFFIEKDLAFLPGPFGRLSIGYDNIVHDLDLGTQSNTREASLGASGAIRSSRNHTLEAEVTGFETLYATINVTDWLYVKAGSVTVDVTTKFTGTETSSYPTSHSLDGSVVGFGVEKSSDNGMFFRLEYNDYSIDGKTVANAGADSKFTATLNDV
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