Scaffold Ga0228687_1009414

Overview

Basic Information

• Taxon OID: 3300023696
• Scaffold ID: Ga0228687_1009414
• Source Dataset Name: Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 52R (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1057
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068873	Metagenome / Metatranscriptome	124	N
F099354	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228687_10094141	F068873	GGAGG	LDTADTGGSFNGGDHDVTLISPVWSPGVSDDVVRLSVLVSISDSGDGVIELGSASGGVENTTGVTLESHLVGFDGNRDWSLSDSGKELRGRVGLDGVDFGDESFWASSLLAGSRVSGSGGVWVCSLGGLSVGGNVFHTLGLPSTSASIAGGVARDELLFGEAQKSSTLLDELSGLNGGGSRESPA
Ga0228687_10094142	F099354	N/A	LVLDGVNGSEGSPVLGGWDSFGGEDGWLGNGLVSSLESENLFVLLLGPGGHEVGSNGEGVCWVSVDLGEFGNLGVEDFLSEHVFFLGSIGDTVSSDVLEELGGSIDFLVFAEIGESEGEGGFAE