Scaffold Ga0228697_100189

Overview

Basic Information

• Taxon OID: 3300023674
• Scaffold ID: Ga0228697_100189
• Source Dataset Name: Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 90R (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4156
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019481	Metagenome / Metatranscriptome	229	Y
F047705	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228697_1001895	F047705	GGAGG	MSLSAKVTTAVNKAFAAAGDLVKQGTLSSKSVSGYDFATRSTISTSGSIVVDVIIQSTQKPSGDGFTVTAMLRSGVNLSVYDTLTVNEKVYNIIDYSDNGFTIEAILVKEA
Ga0228697_1001896	F019481	AGGA	MYDNVLDDIEAVFASETWILNNIDVYPDNYQGTISTETEFCRLNVLPSSSDQLAHGGIKSLNGLIVVKIFVKAGEGQSRIMAISDILDINLENKKLANGTELATSYLNVEGLDPYNKSLYSASYIIPFKIYGE