NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0228694_104198

Scaffold Ga0228694_104198


Overview

Basic Information
Taxon OID3300023567 Open in IMG/M
Scaffold IDGa0228694_104198 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 80R (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1495
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001728Metagenome / Metatranscriptome645Y
F027845Metagenome / Metatranscriptome193Y
F039623Metagenome / Metatranscriptome163N
F103244Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0228694_1041981F039623N/ANNIITFRKFKCLNTNQIYEIVQTECTGRYIINSIDTIVRSDGLRKSFARMELKTRFTNIEGIPEKDYLIKKKKKR
Ga0228694_1041982F027845N/AMTQKEIIEAVKGIHPEVDHEGVDIVYSDGEYDVDVRFTSWDCLFTIEVYSKADDMPLPIQSKAMTELFDYVVELHTVYMRDSLEIQETQDYLDYYER
Ga0228694_1041983F103244N/AMRVEDLASYENSKSKVTVFMEKDTDGSYHFLKHIEEKGSDNEQLIRYSLEMFLSEYYLIEKFIKHNLVQDKHFFRSVMQLKSNRNGDI
Ga0228694_1041985F001728N/AMNKFELRATDKKDHFRFFANGVDLIGEQEKSVYRHIIQVMDNNINTGL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.