Scaffold Ga0247546_101512

Overview

Basic Information

• Taxon OID: 3300023551
• Scaffold ID: Ga0247546_101512
• Source Dataset Name: Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSA4 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 803
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.0427
  • Long. (^o): 13.6161

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021424	Metagenome / Metatranscriptome	219	Y
F040368	Metagenome / Metatranscriptome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247546_1015121	F040368	AGG	MMTIFLNASGANGFKKWSIAHPPSSNDDQRSIAIAVPALDEPMMAPPEQPHRPWLVPGWSAL
Ga0247546_1015122	F021424	AGGA	MPNLDECVITVPVVGGVFGVGRLATRLKALADTEQIGPWHIGQWIDFKHTAIRIRFGSGADRERARETCTGAAS